26–28 Apr 2022
Europe/Berlin timezone
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NeDRex-Web: An Interactive Web Tool for Drug Repurposing by Exploring Heterogeneous Molecular Networks

Not scheduled
2h
CFEL

CFEL

Poster CDL3 (Systems Biology) Poster session with buffet

Speaker

Andreas Maier (Chair of Coputational Systems Biology (Cosy.Bio) - University of Hamburg)

Description

Finding new indications for approved drugs is a promising alternative to de novo drug development, an often lengthy and costly process. Systems medicine has brought forth several different approaches to tackle this important task. We recently published NeDRex, a network medicine tool for the identification of disease modules and drug repurposing. NeDRex-Web (https://web.nedrex.net) brings features of the NeDRex platform to a user-friendly and research oriented web application to explore the large heterogeneous molecular networks. Focusing mainly on drug repurposing, NeDRex-Web implements customizable disease module identification (MI) and drug prioritization (DP) workflows to support users of diverse backgrounds in their research. Users are assisted during every step of their analysis, including: the definition of relevant input sets; the selection from various algorithms for MI or DP; and the prioritization of the results by their statistical significance. The guided connectivity search provides an easy way to identify links between node sets of interest and can be used to create induced networks, e.g. diseasomes.

Primary author

Andreas Maier (Chair of Coputational Systems Biology (Cosy.Bio) - University of Hamburg)

Co-authors

Dr Elisa Anastasi (School of Computing, Newcastle University, Newcastle upon Tyne, UK) Dr Olga Zolotareva (Institute for Computational Systems Biology, University of Hamburg, Hamburg, Germany) Dr James Skelton (School of Computing, Newcastle University, Newcastle upon Tyne, UK) Dr Maria Elkjaer (Computational Biomedicine Lab, Department of Mathematics and Computer Science, University of Southern Denmark, Odense, Denmark) Dr Ana Casas (Department of Pharmacology and Personalised Medicine, School for Mental Health and Neuroscience (MHeNs), Maastricht University, Maastricht, the Netherlands) Dr Cristian Nogales (Department of Pharmacology and Personalised Medicine, School for Mental Health and Neuroscience (MHeNs), Maastricht University, Maastricht, the Netherlands) Prof. Harald Schmidt (Department of Pharmacology and Personalised Medicine, School for Mental Health and Neuroscience (MHeNs), Maastricht University, Maastricht, the Netherlands) Prof. Tim Kacprowski (Braunschweig Integrated Centre of Systems Biology (BRICS), Technical University of Brunswick, Brunswick, Germany) Prof. David Blumenthal (Department Artificial Intelligence in Biomedical Engineering, Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, Germany) Prof. Anil Wipat (School of Computing, Newcastle University, Newcastle upon Tyne, UK) Ms Sepideh Sadegh (Institute for Computational Systems Biology, University of Hamburg, Hamburg, Germany) Prof. Jan Baumbach (Institute for Computational Systems Biology, University of Hamburg, Hamburg, Germany)

Presentation materials

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